Review



rna-seq mapping and rna editing detection pipelines  (Strongarm Inc)

 
  • Logo
  • About
  • News
  • Press Release
  • Team
  • Advisors
  • Partners
  • Contact
  • Bioz Stars
  • Bioz vStars
    • 90
      Buy from Supplier

    Structured Review

    Strongarm Inc rna-seq mapping and rna editing detection pipelines
    The <t>StrongArm</t> RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort
    Rna Seq Mapping And Rna Editing Detection Pipelines, supplied by Strongarm Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna-seq+mapping+and+rna+editing+detection+pipelines/rna+sequencing+data/pmc08597231-66-3-3
    Average 90 stars, based on 1 article reviews
    rna-seq mapping and rna editing detection pipelines - by Bioz Stars, 2026-09
    90/100 stars

    Images

    1) Product Images from "The landscape of coding RNA editing events in pediatric cancer"

    Article Title: The landscape of coding RNA editing events in pediatric cancer

    Journal: BMC Cancer

    doi: 10.1186/s12885-021-08956-5

    The StrongArm RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort
    Figure Legend Snippet: The StrongArm RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort

    Techniques Used: RNA Sequencing, DNA Sequencing

    Related Articles

    RNA Sequencing:

    Article Title: The landscape of coding RNA editing events in pediatric cancer
    Article Snippet: mapping of PCGP RNA-Seq data was done using the GRCh37 reference genome. .. Fig. 1 The StrongArm RNA-Seq mapping and RNA editing detection pipelines. .. A Schematic workflow of StrongArm RNA-seq mapping pipeline.

    DNA Sequencing:

    Article Title: The landscape of coding RNA editing events in pediatric cancer
    Article Snippet: mapping of PCGP RNA-Seq data was done using the GRCh37 reference genome. .. Fig. 1 The StrongArm RNA-Seq mapping and RNA editing detection pipelines. .. A Schematic workflow of StrongArm RNA-seq mapping pipeline.



    Similar Products

    rna-seq mapping and rna editing detection pipelines  (Strongarm Inc)
    90
    Strongarm Inc rna-seq mapping and rna editing detection pipelines
    The <t>StrongArm</t> RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort
    Rna Seq Mapping And Rna Editing Detection Pipelines, supplied by Strongarm Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/rna-seq+mapping+and+rna+editing+detection+pipelines/rna+sequencing+data/pmc08597231-66-3-3
    Average 90 stars, based on 1 article reviews
    rna-seq mapping and rna editing detection pipelines - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

    Image Search Results


    The StrongArm RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort

    Journal: BMC Cancer

    Article Title: The landscape of coding RNA editing events in pediatric cancer

    doi: 10.1186/s12885-021-08956-5

    Figure Lengend Snippet: The StrongArm RNA-Seq mapping and RNA editing detection pipelines. A Schematic workflow of StrongArm RNA-seq mapping pipeline. The pipeline starts with competitive mapping of 5 different combinations of mapper and database, followed by further local refinement. B RNA editing identification pipeline. RNA-Seq BAM files are aligned with StrongArm as shown in (A), and germline and somatic DNA variants are also called from the same patient using WGS or WES of matched tumor and germline DNA. The pipeline searches for RNA-specific (RNA editing) variants in coding (CDS) regions by comparing RNA-Seq reads to DNA-Seq. A series of false editing filters is then employed to remove RNA editing artifacts, followed by manual review of the BAM alignment. The RNA editing candidates are then used to evaluate the editing levels cross the whole cohort

    Article Snippet: Fig. 1 The StrongArm RNA-Seq mapping and RNA editing detection pipelines.

    Techniques: RNA Sequencing, DNA Sequencing